Publications
- From spatial-data to 3D models of the developing human brain
Wang X, Baldock R.A. and Lindsay S. 2010 (in press). Elsevier Methods.
- An e-infrastructure to support collaborative embryo research
A Barker, JI van Hemert, RA Baldock, and MP Atkinson. 2009 (in press). Cluster Computing and the Grid. pp520-525.
Within the context of the EU Design Study Developmental Gene Expression Map, we identify a set of challenges when facilitating collaborat
- Using the DCC Lifecycle to Curate a Gene Expression Database: A Case Study
O'Donoghue, J and J van Hemert. 2009 (in press). The International Journal of Digital Curation.
- Ethical and governance challenges in human fetal tissue research
Woods, S and K Taylor. 2008. Clinical Ethics 3:14-19.
Woods and Taylor 2008 paper.pdf · PDF · 87k
- Matching spatial regions with combinations of interacting gene expression patterns.
J. van Hemert and R. Baldock. In M. Elloumi and et al., editors, Proceedings of the 2nd International Conference on BioInformatics Research and Development, Communications in Computer and Information Science, pages 347–361. Springer Verlag, 2008.
Jano2008.pdf · PDF · 402k
- A review of the scientific, legal, sociological and ethics literatures concerning the use of human embryonic or foetal tissue in research
DGEMap partners in the Policy, Ethics and Life Sciences (PEALS) team at Newcastle University have conducted a review of the scientific, legal, sociological and ethics literatures concerning the use of human embryonic or foetal tissue in research.
Final_report_D3.1Website.pdf · PDF · 1054k
- A molecular neuroanatomical study of the developing human neocortex from 8 to 17 postconceptional weeks revealing the early differentiation of the subplate and subventricular zone
Nadhim Bayatti, Jennifer A moss, Li Sun, Phillip Ambrose, Joseph F.H Ward, Susan Lindsay and Gavin J Clowry. Cerebral Cortex Advance Access published 26 October 2007. Oxford Journal site
- Mining spatial gene expression data for association rules
Jano van Hemert1 and Richard Baldock2
(1) National e-Science Institute, University of Edinburgh, UK
(2) MRC Human Genetics Unit, Edinburgh, UKBook chapter in "Lecture Notes in Bioinformatics", Springer Verlag, p.66--76 (2007)
- Symposium of invited experts to seek to identify areas of consensus on standards
Report writen by Ken Taylor and Simon Woods
Particip_report+_2_.pdf · PDF · 267k
- ESHG2007 Poster: Regulating expression: the governance of human developmental genetics research.
Poster presented at the European Society of Human Genetics conference, 16-19 June 2007, Nice, France.
Ken Taylor and Simon Woods.
Policy Ethics and Life Sciences Research Centre, Newcastle, UK.Nice_poster_DS3+A3.pdf · PDF · 580k
- ESHG2007 Poster: Embryonic expression of OTX2 and DMBX1 in human brain
Poster presented at the European Society of Human Genetics conference, 16-19 June 2007, Nice, France.
C. Ramos, D. Vouyiouklis, M. Scott, A. Andras, S. Lindsay
Institute of Human Genetics, Newcastle University, Newcastle upon Tyne,
United KingdomDS4+CRposter+2A3.pdf · PDF · 679k
- ESHG2007 Poster: 3D modelling and gene expression mapping in the developing human brain
Poster presented at the European Society of Human Genetics conference, 16-19 June 2007, Nice, France.
Alina Andras1, Janet Kerwin1, Mark Scott1, Susan Lindsay1*, Richard Baldock2 and Demetrius Vouyiouklis1
1Institute of Human Genetics, University of NeAA+ESHG+2007+poster+3_SL+A3.pdf · PDF · 872k
- ESHG2007 Poster: "DS5: Biological storage and retrieval: Bringing e-Science to embryo bioinformatics resources."
Poster presented at the European Society of Human Genetics conference, 16-19 June 2007, Nice, France.
M. K. Scott1, J. van Hemert2, Y. Chen2, X. Wang1, S. Lisgo1, S. Lindsay1, M. Atkinson2, R. A. Baldock3; 1Institute of Human Genetics, Newcastle upon
Nice_DS5_2007_Final+A3.pdf · PDF · 996k
Related Publications
- Progressive loss of PAX6, TBR2, NEUROD and TBR1 mRNA gradients correlates with translocation of EMX2 to the cortical plate during human cortical development
The transcription factors Emx2 and Pax6 are expressed in the proliferating zones of the developing rodent neocortex, and gradients
of expression interact in specifying caudal and rostral identities. Pax6 is also involved in corticoneurogenesis, being expBayatti EJN 2008.pdf · PDF · 660k
- Minimum information specification for in situ hybridization and immunohistochemistry experiments (MISFISHIE). Nature Biotechnology (2008) 26(3):305-312
The authors report guidelines for gene expression localization experiments: the minimum information specification for in situ hybridization and immunohistochemistry experiments (MISFISHIE).
Guidelines for reporting gene expression localisation.pdf · PDF · 258k
- EMAGE: a spatial database of gene expression patterns during mouse embryo development
EMAGE (http://genex.hgu.mrc.ac.uk/Emage/database) is a freely available, curated database of gene expression patterns generated by in situ techniques in the developing mouse embryo. It is unique in that it contains standardized spatial representations of
NAR2006+EMAGE.pdf · PDF · 345k
- MRC-Wellcome Trust Human Developmental Biology Resource: enabling studies of human developmental gene expression.
A striking finding of the human and mouse genome sequencing projects is that, although there are many differences between the two species, they have similar numbers of genes. The differences arise during development and are driven, in part, by changes in
TIGS+2005+Lindsay+and+Copp.pdf · PDF · 211k